Population Genomics

Type Start End
Internal Jan 2021 Jul 2022
Responsible URL
Xavier Giro-i-Nieto

Description

Figure by Matt Howard - Argonne's Midwest Center for Structural Genomics deposits 1,000th protein structure, CC BY-SA 2.0, https://commons.wikimedia.org/w/index.php?curid=9752165

 

Joint collaboration with Dr. Alexander Ioannidis and Dr. Daniel Mas-Montserrat from Stanford University.

 

 

Publications

Bernal O, Mas-Montserrat D, Giró-i-Nieto X, Ioannidis AG. SALAI-Net: species-agnostic local ancestry inference network. Bioinformatics. 2022 ;38.
Bartusiak E, Barrabés M, Rymbe A, Gimbernat J, López C, Barberis L, Mas-Montserrat D, Giró-i-Nieto X, Ioannidis AG. Predicting Dog Phenotypes from Genotypes. In: 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'22). 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'22). ; 2022.
Mas-Montserrat D, Perera M, Barrabés M, Geleta M, Giró-i-Nieto X, Ioannidis AG. Generative Moment Matching Networks for Genotype Simulation. In: 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'22). 44th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'22). ; 2022.
Barrabés M. Machine Learning for Genomic Sequence Processing. (Mas-Montserrat D, Giró-i-Nieto X, Ioannidis AG).; 2022.
Perera M. Ancestry-conditioned Generative Models for Genotyping. (Mas-Montserrat D, Giró-i-Nieto X, Ioannidis AG).; 2022.
Geleta M, Mas-Montserrat D, Bustamante C, Giró-i-Nieto X, Ioannidis AG. Deep variational autoencoders for population genetics: applications in classification, imputation, dimensionality reduction, and novel lossless data compression. In: American Society of Human Genetics (ASHG). American Society of Human Genetics (ASHG). Virtual: ASHG; 2021.
Dominguez A, Mas-Montserrat D, Bustamante C, Giró-i-Nieto X, Ioannidis AG. Neural ADMIXTURE: rapid population clustering with autoencoders. In: 2021 Society for Molecular Biology & Evolution meeting (SMBEv2021). 2021 Society for Molecular Biology & Evolution meeting (SMBEv2021). Virtual; 2021. (1.76 MB)
Geleta M. Unsupervised learning with applications in genomic Mas-Montserrat D, Ioannidis AG, Giró-i-Nieto X. 2021 ;BSc Data Science Engineering.
Oriol B. Species-agnostic Local Ancestry Inference on Genomic Data with Convolutions Mas-Montserrat D, Ioannidis AG, Giró-i-Nieto X. 2021 .

Collaborators

Xavier Giró Associate Professor xavier.giro@upc.edu