Population Genomics

Type Start End
Internal Jan 2021 Jul 2022
Responsible URL
Xavier Giro-i-Nieto

Description

Figure by Matt Howard - Argonne's Midwest Center for Structural Genomics deposits 1,000th protein structure, CC BY-SA 2.0, https://commons.wikimedia.org/w/index.php?curid=9752165

 

Joint collaboration with Dr. Alexander Ioannidis and Dr. Daniel Mas-Montserrat from Stanford University.

 

 

Publications

Geleta M, Mas-Montserrat D, Bustamante C, Giró-i-Nieto X, Ioannidis AG. Deep variational autoencoders for population genetics: applications in classification, imputation, dimensionality reduction, and novel lossless data compression. In: American Society of Human Genetics (ASHG). American Society of Human Genetics (ASHG). Virtual: ASHG; 2021.
Dominguez A, Mas-Montserrat D, Bustamante C, Giró-i-Nieto X, Ioannidis AG. Neural ADMIXTURE: rapid population clustering with autoencoders. In: 2021 Society for Molecular Biology & Evolution meeting (SMBEv2021). 2021 Society for Molecular Biology & Evolution meeting (SMBEv2021). Virtual; 2021. (1.76 MB)
Geleta M. Unsupervised learning with applications in genomic Mas-Montserrat D, Ioannidis AG, Giró-i-Nieto X. 2021 ;BSc Data Science Engineering.
Oriol B. Species-agnostic Local Ancestry Inference on Genomic Data with Convolutions Mas-Montserrat D, Ioannidis AG, Giró-i-Nieto X. 2021 .

Pages

Collaborators

Xavier Giró Associate Professor xavier.giro@upc.edu