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2025
Jimenez L, Hernandez C, Vilaplana V. Breast Cancer Molecular Subtyping from H&E Whole Slide Images using Foundation Models and Transformers. In Artificial Intelligence and Imaging for Diagnostic and Treatment Challenges in Breast Care. Springer; 2025.
Pina O, Dorca E, Vilaplana V. Cell Detection with Transformers – A Paradigm Shift from Segmentation to Detection in Digital Pathology. In 21st European Congress on Digital Pathology. 2025.  (599.69 KB)
Hernandez C, Podlipnik S, Ficapal J, Puig S, Malvehy J, Vilaplana V. Comparative Analysis and Interpretability of Survival Models for Melanoma Prognosis. Computers in Biology and Medicine. 2025;190.
Pina O. From pixels to graphs: cell-based digital pathology image analysis. Vilaplana V. Signal Theory and Communications. 2025.
Pina O, Jimenez L, Dorca E, Vilaplana V. Hierarchical Cell-to-Patch Graphs for Context-Aware Cell Classification in Digital Pathology. In 21st European Congress on Digital Pathology. Barcelona: The European Society of Digital and Integrative Pathology; 2025.  (600.71 KB)
Calm B, Cumplido-Mayoral I, Gispert JDomingo, Vilaplana V. Identifying brain ageing trajectories using variational autoencoders. In PRedictive Intelligence in MEdicine. Springer International Publishing; 2025.
Pina O, Vilaplana V. Layer-Wise Training of Graph Neural Networks With Self-Supervised Learning. IEEE Transactions on Neural Networks and Learning Systems,. 2025;.
Dorca E, Pina O, Taco Mdel Rosari, Fermamdez EGuerra, Vilaplana V, Bel AVidal. Multimodal AI for Atypical Hyperplasia Diagnosis: A Comparative Study of CNNs, GNNs, and Hybrid Models. In 21st European Congress on Digital Pathology. Barcelona: The European Society of Digital and Integrative Pathology; 2025.  (592.84 KB)
Cumplido-Mayoral I, Sánchez-Benavides G, Alomà MMilà, Falcon C, Cacciaglia R, Minguillon C, et al.. Neuroimaging-derived biological brain age and its associations with glial reactivity and synaptic dysfunction cerebrospinal fluid biomarkers. Molecular psychiatry. 2025;.
Lems CM, Klubíčková N, Brattoli B, Lee T, Vilaplana V, Fernández PLuis, et al.. Towards a multicentric open DigitAL PatHology assIstant beNchmark: Initial Results from the DALPHIN Study. In United States & Canadian Academy of Pathology 114th Annual Meeting (USCAP 2025). Boston, USA: Laboratory Investigation, Volume 105, Issue 3, Supplement, 2025, 103609, ISSN 0023-6837; 2025.
Manjabacas A, Chic O, García-Ladona E, Tuset VM, Morros JR, Sayrol E, et al.. Twenty years of AFORO: New developments and connections enhancing otolith research. Fisheries Research. 2025;281.
Pina O, Dorca E, Vilaplana V. Unsupervised Domain Adaptation for Cell Detection Across Histopathological Stains. In 21st European Congress on Digital Pathology. Barcelona: The European Society of Digital and Integrative Pathology; 2025.  (601.11 KB)
2024
Gené-Mola J, Ferrer-Ferrer M, Hemming J, Dalfsen P, Hoog D, Sanz-Cortiella R, et al.. AmodalAppleSize_RGB-D dataset: RGB-D images of apple trees annotated with modal and amodal segmentation masks for fruit detection, visibility and size estimation. Data in Brief. 2024;52.
Hernandez C, Combalia M, Podlipnik S, Codella NCF, Rotemberg V, Halpern AC, et al.. Bcn20000: Dermoscopic lesions in the wild. Nature - Scientific Data. 2024;11.
Cumplido-Mayoral I. Biological brain-age prediction using Machine Learning on neuroimaging data: Links with pathophysiological mechanisms, dementia risk factors and cognitive decline. Vilaplana V, Gispert JD. Department of Experimental and Health Sciences (DCEXS), Universitat Pompeu Fabra. 2024.
Jimenez L, Hernandez C, Vilaplana V. Breast Cancer Molecular Subtyping from H&E Whole Slide Images using Foundation Models and Transformers. In Deep Breast Workshop on AI and Imaging for Diagnostic and Treatment Challenges in Breast Care, MICCAI 2024. 2024.
Hernandez C, Jimenez L, Vilaplana V. Bridging Domains in Melanoma Diagnostics: Predicting BRAF Mutations and Sentinel Lymph Node Positivity with Attention-Based Models in Histological Images. In IEEE/CVF Conference on Computer Vision and Pattern Recognition (DEF-AI-MIA workshop). 2024.
Pina O, Dorca E, Vilaplana V. Cell-DETR: Efficient cell detection and classification in WSIs with transformers. In Medical Imaging with Deep Learning (MIDL 2024). 2024.
Perez-Cano J, Valero ISansano, Anglada D, Pina O, Salembier P, Marqués F. Combining graph neural networks and computer vision methods for cell nuclei classification in lung tissue. Heliyon. 2024;10(7).  (4.05 MB)
Pina O, Vilaplana V. Feature propagation as self-supervision signals on graphs. Knowledge-Based Systems. 2024;289.

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