Network Inference Benchmarking
| Resource Type | Date |
|---|---|
| Software | 2015-03-11 |
Description
Network Inference Benchmarking
Netbenchmark is an open-source R/Bioconductor package that implements an exhaustive benchmarking of unsupervised network inference methods from data. It is focused on but not limited to gene networks.
The package was written by Pau Bellot, Catharina Olsen and Patrick E. Meyer in the Biosys Group of the Université de Liège in collaboration with the GPI group of Universitat Politècnica de Catalunya.
Netbenchmark, is maintained by Pau Bellot and licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International.
Installation
To install this package, start R (>= 3.2) and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("netbenchmark")Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("netbenchmark")People involved
| Pau Bellot | PhD Candidate |
| Philippe Salembier | Professor |
| Albert Oliveras | Associate Professor |
Related Publications
, “NetBenchmark: a bioconductor package for reproducible benchmarks of gene regulatory network inference”, BMC Bioinformatics, vol. 16, 2015. (851.49 KB) |