@conference {cBarrabes, title = {Adversarial Learning for Feature Shift Detection and Correction}, booktitle = {Neural Information Processing Systems (NeurIPS)}, year = {2023}, month = {12/2023}, address = {New Orleans, USA}, abstract = {

TL;DR: We introduce a framework inspired in adversarial learning to detect and correct features originating a distribution shift between datasets.

Data shift is a phenomenon present in many real-world applications, and while there are multiple methods trying to detect shifts, the task of localizing and correcting the features originating such shifts has not been studied in depth. Feature shifts can occur in many datasets, including in multi-sensor data, where some sensors are malfunctioning, or in tabular and structured data, including biomedical, financial, and survey data, where faulty standardization and data processing pipelines can lead to erroneous features. In this work, we explore using the principles of adversarial learning, where the information from several discriminators trained to distinguish between two distributions is used to both detect the corrupted features and fix them in order to remove the distribution shift between datasets. We show that mainstream supervised classifiers, such as random forest or gradient boosting trees, combined with simple iterative heuristics, can localize and correct feature shifts outperforming current statistical and neural network-based techniques.

}, author = {Barrab{\'e}s, M{\'\i}riam and Mas-Montserrat, Daniel and Geleta, Margarita and Xavier Gir{\'o}-i-Nieto and Ioannidis, Alexander G.} } @article {xPerera22, title = {Ancestry-conditioned Generative Models for Genotyping}, year = {2022}, abstract = {

Local ancestry inference (LAI) identifies the ancestry of each segment of an individual{\textquoteright}s genome and it is a critical step in the analysis of human genomes with applications from pharmacogenomics and personalized medicine to increase detection of genetic associations.\ 

New LAI techniques are appearing at a fast pace in both industry and academic research and large data-sets of human genomic sequences from the ancestries of interest are required to train those methods. Usually, those data-sets are protected by privacy regulations, are proprietary or accessible only when they come with restrictions due to its nature. An interesting way to overcome those difficulties is through the generation of data samples that could be similar enough to real sequences from ancestries of interest. A generalized model can be openly shared because there is no real individual information in there.\ 

Thus, we present a class-conditional Generative adversarial Model and a Conditional Generative Moment-Matching Network intended to generate new realistic genotypes of a desired ancestry. In addition, we present a privacy mechanism that extracts features from the real data to generate new realistic genotypes by using features.

}, author = {Perera, Maria}, editor = {Mas-Montserrat, Daniel and Xavier Gir{\'o}-i-Nieto and Ioannidis, Alexander G.} }