@article {aBernal22, title = {SALAI-Net: species-agnostic local ancestry inference network}, journal = {Bioinformatics}, volume = {38}, year = {2022}, month = {09/2022}, chapter = {ii27}, abstract = {

Motivation
Local ancestry inference (LAI) is the high resolution prediction of ancestry labels along a DNA sequence. LAI is important in the study of human history and migrations, and it is beginning to play a role in precision medicine applications including ancestry-adjusted genome-wide association studies (GWASs) and polygenic risk scores (PRSs). Existing LAI models do not generalize well between species, chromosomes or even ancestry groups, requiring re-training for each different setting. Furthermore, such methods can lack interpretability, which is an important element in each of these applications.

Results
We present SALAI-Net, a portable statistical LAI method that can be applied on any set of species and ancestries (species-agnostic), requiring only haplotype data and no other biological parameters. Inspired by identity by descent methods, SALAI-Net estimates population labels for each segment of DNA by performing a reference matching approach, which leads to an interpretable and fast technique. We benchmark our models on whole-genome data of humans and we test these models{\textquoteright} ability to generalize to dog breeds when trained on human data. SALAI-Net outperforms previous methods in terms of balanced accuracy, while generalizing between different settings, species and datasets. Moreover, it is up to two orders of magnitude faster and uses considerably less RAM memory than competing methods.

}, doi = {https://doi.org/10.1093/bioinformatics/btac464}, url = {https://academic.oup.com/bioinformatics/article/38/Supplement_2/ii27/6701999?login=false$\#$373158629}, author = {Bernal, Oriol and Mas-Montserrat, Daniel and Xavier Gir{\'o}-i-Nieto and Ioannidis, Alexander G.} } @mastersthesis {xBernal, title = {Predicting emotion in movies: Recurrent and convolutional models applied to videos}, year = {2017}, abstract = {

This Thesis explores di erent approaches using deep learning techniques to predict emotions\ in videos.\ Working with videos implies a huge amount of data including visual frames and acoustic\ samples. The rst step of the project is basically to extract features to represent the videos in\ small sets of arrays. This procedure is done using pre-trained models based on Convolutional\ Networks, the state of the art in visual recognition. Firstly, visual features are extracted using\ 3D convolutions and acoustic features are extracted using VGG19, a pre-trained convolutional\ model for images fi ne-tuned to accept the audio inputs.\ Later, these features are fed into a Recurrent model capable of exploiting the temporal information.\ Emotions are measured in terms of valence and arousal, values between [-1, 1]. Additionally,\ the same techniques are also used to attempt to predict fear scenes. In consequence, this thesis\ deals with both regression and classi cation problems.\ Several architectures and di erent parameters have been tested in order to achieve the best\ performance. Finally, the results will be published in the MediaEval 2017 Challenge and compared\ to the state-of-the-art solutions.

Predicting Emotion in Movies from Xavier Giro-i-Nieto
}, author = {Bernal, Oriol}, editor = {Xavier Gir{\'o}-i-Nieto and Zaharieva, Maia} }